diff --git a/rse/plugins/org.eclipse.rse.core/src/org/eclipse/rse/core/subsystems/IRemoteSystemEnvVar.java b/rse/plugins/org.eclipse.rse.core/src/org/eclipse/rse/core/subsystems/IRemoteSystemEnvVar.java
index 7dee38bcdc0..bf776b5faac 100644
--- a/rse/plugins/org.eclipse.rse.core/src/org/eclipse/rse/core/subsystems/IRemoteSystemEnvVar.java
+++ b/rse/plugins/org.eclipse.rse.core/src/org/eclipse/rse/core/subsystems/IRemoteSystemEnvVar.java
@@ -12,26 +12,13 @@
  * Emily Bruner, Mazen Faraj, Adrian Storisteanu, Li Ding, and Kent Hawley.
  * 
  * Contributors:
- * {Name} (company) - description of contribution.
+ * David McKnight  (IBM)  - [208813] removing deprecated APIs
  *******************************************************************************/
 
 package org.eclipse.rse.core.subsystems;
 
-//
-
-/**
- * @lastgen interface RemoteSystemEnvVar  {}
- */
-
 public interface IRemoteSystemEnvVar {
 
-	/**
-	 * <!-- begin-user-doc -->
-	 * <!-- end-user-doc -->
-	 * @generated
-	 */
-	String copyright = "(c) Copyright IBM Corporation 2002, 2004."; //$NON-NLS-1$
-
 	/**
 	 * @generated This field/method will be replaced during code generation 
 	 * @return The value of the Name attribute
@@ -58,19 +45,4 @@ public interface IRemoteSystemEnvVar {
 	 */
 	void setValue(String value);
 
-	/**
-	 * @generated This field/method will be replaced during code generation 
-	 * @return The value of the AdditionalAttributes attribute
-	 * Additional attributes that may need to be persisted per environment variable.
-	 * @deprecated
-	 */
-	String getAdditionalAttributes();
-
-	/**
-	 * @generated This field/method will be replaced during code generation 
-	 * @param value The new value of the AdditionalAttributes attribute
-	 * @deprecated
-	 */
-	void setAdditionalAttributes(String value);
-
 }
diff --git a/rse/plugins/org.eclipse.rse.subsystems.shells.core/src/org/eclipse/rse/internal/subsystems/shells/subsystems/RemoteSystemEnvVar.java b/rse/plugins/org.eclipse.rse.subsystems.shells.core/src/org/eclipse/rse/internal/subsystems/shells/subsystems/RemoteSystemEnvVar.java
index 3d74ef42db2..722f7216e1b 100644
--- a/rse/plugins/org.eclipse.rse.subsystems.shells.core/src/org/eclipse/rse/internal/subsystems/shells/subsystems/RemoteSystemEnvVar.java
+++ b/rse/plugins/org.eclipse.rse.subsystems.shells.core/src/org/eclipse/rse/internal/subsystems/shells/subsystems/RemoteSystemEnvVar.java
@@ -12,7 +12,7 @@
  * Emily Bruner, Mazen Faraj, Adrian Storisteanu, Li Ding, and Kent Hawley.
  * 
  * Contributors:
- * {Name} (company) - description of contribution.
+ * David McKnight  (IBM)  - [208813] removing deprecated APIs
  *******************************************************************************/
 
 package org.eclipse.rse.internal.subsystems.shells.subsystems;
@@ -28,9 +28,6 @@ import org.eclipse.rse.core.subsystems.IRemoteSystemEnvVar;
 /**
  * Encapsulation of environment variable properties set uniquely per connection.
  */
-/**
- * @lastgen class RemoteSystemEnvVarImpl Impl implements RemoteSystemEnvVar {}
- */
 public class RemoteSystemEnvVar implements IRemoteSystemEnvVar
 {
 	/**
@@ -70,14 +67,8 @@ public class RemoteSystemEnvVar implements IRemoteSystemEnvVar
 	 * @generated This field/method will be replaced during code generation.
 	 */
 	protected String value = VALUE_EDEFAULT;
-	/**
-	 * The default value of the '{@link #getAdditionalAttributes() <em>Additional Attributes</em>}' attribute.
-	 * <!-- begin-user-doc -->
-	 * <!-- end-user-doc -->
-	 * @see #getAdditionalAttributes()
-	 * @generated
-	 * @ordered
-	 */
+
+	
 	protected static final String ADDITIONAL_ATTRIBUTES_EDEFAULT = null;
 
 	/**
@@ -126,24 +117,6 @@ public class RemoteSystemEnvVar implements IRemoteSystemEnvVar
 		value = newValue;
 	}
 
-	/**
-	 * @generated This field/method will be replaced during code generation 
-	 * Additional attributes that may need to be persisted per environment variable.
-	 * @deprecated
-	 */
-	public String getAdditionalAttributes()
-	{
-		return additionalAttributes;
-	}
-
-	/**
-	 * @generated This field/method will be replaced during code generation.
-	 * @deprecated
-	 */
-	public void setAdditionalAttributes(String newAdditionalAttributes)
-	{
-		additionalAttributes = newAdditionalAttributes;
-	}
 
 	/**
 	 * @generated This field/method will be replaced during code generation.
diff --git a/rse/plugins/org.eclipse.rse.subsystems.shells.core/src/org/eclipse/rse/subsystems/shells/core/subsystems/IRemoteCmdSubSystem.java b/rse/plugins/org.eclipse.rse.subsystems.shells.core/src/org/eclipse/rse/subsystems/shells/core/subsystems/IRemoteCmdSubSystem.java
index d903124b7b3..39db33c7d54 100644
--- a/rse/plugins/org.eclipse.rse.subsystems.shells.core/src/org/eclipse/rse/subsystems/shells/core/subsystems/IRemoteCmdSubSystem.java
+++ b/rse/plugins/org.eclipse.rse.subsystems.shells.core/src/org/eclipse/rse/subsystems/shells/core/subsystems/IRemoteCmdSubSystem.java
@@ -12,6 +12,7 @@
  * 
  * Contributors:
  * Martin Oberhuber (Wind River) - [186128] Move IProgressMonitor last in all API
+ * David McKnight  (IBM)  - [208813] removing deprecated APIs
  ********************************************************************************/
 
 package org.eclipse.rse.subsystems.shells.core.subsystems;
@@ -70,15 +71,6 @@ public interface IRemoteCmdSubSystem extends ISubSystem{
 	 */
 	public IRemoteCommandShell runShell(Object context, IProgressMonitor monitor) throws Exception;
 
-	/**
-	 * Send a command as input to a running command shell. 
-	 * @param input the command to invoke in the shell.
-	 * @param commandObject the shell or command to send the invocation to.
-     * 
-     * @deprecated use sendCommandToShell(IProgressMonitor, String input, Object commmandObject)
-	 */
-	public void sendCommandToShell(String input, Object commandObject) throws Exception;
-	
 	/**
 	 * Send a command as input to a running command shell.
 	 * @param input the command to invoke in the shell.
diff --git a/rse/plugins/org.eclipse.rse.subsystems.shells.core/src/org/eclipse/rse/subsystems/shells/core/subsystems/RemoteCmdSubSystem.java b/rse/plugins/org.eclipse.rse.subsystems.shells.core/src/org/eclipse/rse/subsystems/shells/core/subsystems/RemoteCmdSubSystem.java
index def0641c819..43b88e4fefd 100644
--- a/rse/plugins/org.eclipse.rse.subsystems.shells.core/src/org/eclipse/rse/subsystems/shells/core/subsystems/RemoteCmdSubSystem.java
+++ b/rse/plugins/org.eclipse.rse.subsystems.shells.core/src/org/eclipse/rse/subsystems/shells/core/subsystems/RemoteCmdSubSystem.java
@@ -852,48 +852,7 @@ public abstract class RemoteCmdSubSystem extends SubSystem implements IRemoteCmd
 		return runCommand(command, context,  true, monitor);
 	}
 
-	/**
-	 * Send a command as input to a running command shell.
-	 * 
-	 * @param input the command to invoke in the shell.
-	 * @param commandObject the shell or command to send the invocation to.
-	 * 
-	 * @deprecated use {@link #sendCommandToShell(String, Object, IProgressMonitor)}
-	 */
-	public void sendCommandToShell(String input,  Object commandObject) throws Exception
-	{
-		boolean ok = true;
-		if (!isConnected())
-			ok = promptForPassword();
-		if (ok)
-		{
-			Display display = Display.getCurrent();
-			if (display != null)
-			{
-				internalSendCommandToShell(input, commandObject, new NullProgressMonitor());
-			}
-			else
-			{
-			try
-			{
-				SendCommandToShellJob job = new SendCommandToShellJob(input, commandObject);
-
-				scheduleJob(job, null);
-			}
-			catch (InterruptedException exc)
-			{
-				if (shell == null)
-					throw exc;
-				else
-					showOperationCancelledMessage(shell);
-			}
-			}
-		}
-		else
-			SystemBasePlugin.logDebugMessage(this.getClass().getName(),
-					"in SubSystemImpl.sendCommandToShell: isConnected() returning false!"); //$NON-NLS-1$
-
-	}
+	
 	
 	/**
 	 * Send a command as input to a running command shell.